Files associated with MEtabolomes, TRaits, and INteractions-Knowledge Graph (METRIN-KG). Contains input and output files used in mapping taxonomy, metadata, ontology and knowledge graph construction. Associated github repositories are metrin-kg and earth_metabolome_ontologyDirectory structure looks like the following. This directory can be used in combination with the code at the github repo metrin-kg, globi raw data and TRY database raw data.└── metrin-kg-data    ├── ontology    │   └── emi.ttl.gz    ├── processed    │   ├── globi    │   │   ├── correctedBiologicalSexNames.tsv    │   │   ├── correctedBodyPartNamesGlobi.csv    │   │   ├── correctedLifeStageNamesGlobi.csv    │   │   ├── mappedBiologicalSexNames.tsv    │   │   ├── unmappedBiologicalSexNames.tsv    │   │   ├── verbatim_mappedBodyPartNamesGlobi.csv    │   │   ├── verbatim_mappedLifeStageNamesGlobi.csv    │   │   ├── verbatim_unmappedBodyPartNamesGlobi_mod.csv    │   │   └── verbatim_unmappedLifeStageNamesGlobi_mod.csv    │   ├── KG    │   │   ├── enpkg-rdf-v4.tar.gz    │   │   ├── examples_METRINKG-v0.1.ttl.gz    │   │   ├── globi_output_w3id_v0.ttl.gz    │   │   ├── taxonomy_output_v0.ttl.gz    │   │   ├── trydb_output_w3id_v0.ttl.gz    │   │   └── void_METRINKG-v0.1.ttl.gz    │   ├── trydb    │   │   ├── EmiMappingToTryDb.txt    │   │   ├── qudtMappingToTryDb_full.txt    │   │   └── qudtMappingToTryDb.txt    │   ├── wdTax_duplicates.txt    │   ├── wdTax_GloBI.txt.gz    │   ├── wdTax_SPARQL_lineage_filtered_aligned.txt.gz    │   ├── wdTax_SPARQL_lineage_filtered.txt.gz    │   ├── wdTax_SPARQL_lineage.txt.gz    │   ├── wdTax_SPARQL.txt.gz    │   └── wdTax_TRYdb.txt.gz    └── raw        ├── enpkg_wd_pfId.csv.gz        └── Try20243712146549_TRY6.0_SpeciesList_TaxonomicHarmonization.csv

Files associated with MEtabolomes, TRaits, and INteractions-Knowledge Graph (METRIN-KG). Contains input and output files used in mapping taxonomy, metadata, ontology and knowledge graph construction. Associated github repositories are metrin-kg and earth_metabolome_ontologyDirectory structure looks like the following. This directory can be used in combination with the code at the github repo metrin-kg, globi raw data and TRY database raw data.metrin-kg└── metrin-kg-data    ├── case-studies    │   ├── CS1    │   │   ├── CS1_viz.py    │   │   ├── metrin-kg_APlx2T_q1.tsv    │   │   ├── metrin-kg_CAIpHR_q2.tsv    │   │   └── metrin-kg_MptP26_q3.tsv    │   ├── CS2    │   │   ├── CS2_viz.py    │   │   └── metrin-kg_ZVBghY_q4.tsv    │   ├── CS3    │   │   ├── CS3_viz.py    │   │   └── metrin-kg_t49TVV_q5.tsv    │   ├── CS4    │   │   ├── CS4_viz.py    │   │   └── metrin-kg_orF1qY_q6.tsv    │   └── CS5    │       ├── CS5_viz.py    │       ├── metrin-kg_rtvxnd_q7.tsv    │       └── metrin-kg_YEEGSZ_q8.tsv    ├── ontology    │   └── emi.ttl.gz    ├── processed    │   ├── globi    │   │   ├── correctedBiologicalSexNames.tsv    │   │   ├── correctedBodyPartNamesGlobi.csv    │   │   ├── correctedLifeStageNamesGlobi.csv    │   │   ├── mappedBiologicalSexNames.tsv    │   │   ├── unmappedBiologicalSexNames.tsv    │   │   ├── verbatim_mappedBodyPartNamesGlobi.csv    │   │   ├── verbatim_mappedLifeStageNamesGlobi.csv    │   │   ├── verbatim_unmappedBodyPartNamesGlobi_mod.csv    │   │   └── verbatim_unmappedLifeStageNamesGlobi_mod.csv    │   ├── KG    │   │   ├── enpkg-rdf-v4.tar.gz    │   │   ├── examples_METRINKG-v0.1.ttl.gz    │   │   ├── globi_output_w3id_v0.ttl.gz    │   │   ├── taxonomy_output_v0.ttl.gz    │   │   ├── trydb_output_w3id_v0.ttl.gz    │   │   └── void_METRINKG-v0.1.ttl.gz    │   ├── trydb    │   │   ├── EmiMappingToTryDb.txt    │   │   ├── qudtMappingToTryDb_full.txt    │   │   └── qudtMappingToTryDb.txt    │   ├── wdTax_duplicates.txt    │   ├── wdTax_GloBI.txt.gz    │   ├── wdTax_SPARQL_lineage_filtered_aligned.txt.gz    │   ├── wdTax_SPARQL_lineage_filtered.txt.gz    │   ├── wdTax_SPARQL_lineage.txt.gz    │   ├── wdTax_SPARQL.txt.gz    │   └── wdTax_TRYdb.txt.gz    └── raw        ├── enpkg_wd_pfId.csv.gz        └── Try20243712146549_TRY6.0_SpeciesList_TaxonomicHarmonization.csv

Files associated with MEtabolomes, TRaits, and INteractions-Knowledge Graph (METRIN-KG). Contains input and output files used in mapping taxonomy, metadata, ontology and knowledge graph construction. Associated github repositories are metrin-kg and earth_metabolome_ontologyDirectory structure looks like the following. This directory can be used in combination with the code at the github repo metrin-kg, globi raw data and TRY database raw data.└── metrin-kg-data    ├── ontology    │   └── emi.ttl.gz    ├── processed    │   ├── globi    │   │   ├── correctedBiologicalSexNames.tsv    │   │   ├── correctedBodyPartNamesGlobi.csv    │   │   ├── correctedLifeStageNamesGlobi.csv    │   │   ├── mappedBiologicalSexNames.tsv    │   │   ├── unmappedBiologicalSexNames.tsv    │   │   ├── verbatim_mappedBodyPartNamesGlobi.csv    │   │   ├── verbatim_mappedLifeStageNamesGlobi.csv    │   │   ├── verbatim_unmappedBodyPartNamesGlobi_mod.csv    │   │   └── verbatim_unmappedLifeStageNamesGlobi_mod.csv    │   ├── KG    │   │   ├── enpkg-rdf-v4.tar.gz    │   │   ├── examples_EMI-v0.ttl.gz    │   │   ├── globi_output_w3id_v0.ttl.gz    │   │   ├── taxonomy_output_v0.ttl.gz    │   │   ├── trydb_output_w3id_v0.ttl.gz    │   │   └── void-metrin-kg-v0.ttl.gz    │   ├── trydb    │   │   ├── EmiMappingToTryDb.txt    │   │   ├── qudtMappingToTryDb_full.txt    │   │   └── qudtMappingToTryDb.txt    │   ├── wdTax_duplicates.txt    │   ├── wdTax_GloBI.txt.gz    │   ├── wdTax_SPARQL_lineage_filtered_aligned.txt.gz    │   ├── wdTax_SPARQL_lineage_filtered.txt.gz    │   ├── wdTax_SPARQL_lineage.txt.gz    │   ├── wdTax_SPARQL.txt.gz    │   └── wdTax_TRYdb.txt.gz    └── raw        ├── enpkg_wd_pfId.csv.gz        └── Try20243712146549_TRY6.0_SpeciesList_TaxonomicHarmonization.csv

Files associated with MEtabolomes, TRaits, and INteractions-Knowledge Graph (METRIN-KG). Contains input and output files used in mapping taxonomy, metadata, ontology and knowledge graph construction. Associated github repositories are metrin-kg and earth_metabolome_ontologyDirectory structure looks like the following. This directory can be used in combination with the code at the github repo metrin-kg, globi raw data and TRY database raw data.└── metrin-kg-data    ├── ontology    │   └── emi.ttl.gz    ├── processed    │   ├── globi    │   │   ├── correctedBiologicalSexNames.tsv    │   │   ├── correctedBodyPartNamesGlobi.csv    │   │   ├── correctedLifeStageNamesGlobi.csv    │   │   ├── mappedBiologicalSexNames.tsv    │   │   ├── unmappedBiologicalSexNames.tsv    │   │   ├── verbatim_mappedBodyPartNamesGlobi.csv    │   │   ├── verbatim_mappedLifeStageNamesGlobi.csv    │   │   ├── verbatim_unmappedBodyPartNamesGlobi_mod.csv    │   │   └── verbatim_unmappedLifeStageNamesGlobi_mod.csv    │   ├── KG    │   │   ├── enpkg-rdf-v4.tar.gz    │   │   ├── examples_EMI-v0.ttl.gz    │   │   ├── globi_output_w3id_v0.ttl.gz    │   │   ├── taxonomy_output_v0.ttl.gz    │   │   ├── trydb_output_w3id_v0.ttl.gz    │   │   └── void-metrin-kg-v0.ttl.gz    │   ├── trydb    │   │   ├── EmiMappingToTryDb.txt    │   │   ├── qudtMappingToTryDb_full.txt    │   │   └── qudtMappingToTryDb.txt    │   ├── wdTax_duplicates.txt    │   ├── wdTax_GloBI.txt.gz    │   ├── wdTax_SPARQL_lineage_filtered_aligned.txt.gz    │   ├── wdTax_SPARQL_lineage_filtered.txt.gz    │   ├── wdTax_SPARQL_lineage.txt.gz    │   ├── wdTax_SPARQL.txt.gz    │   └── wdTax_TRYdb.txt.gz    └── raw        ├── enpkg_wd_pfId.csv.gz        └── Try20243712146549_TRY6.0_SpeciesList_TaxonomicHarmonization.csv

Files associated with MEtabolomes, TRaits, and INteractions-Knowledge Graph (METRIN-KG). Contains input and output files used in mapping taxonomy, metadata, ontology and knowledge graph construction. Associated github repositories are metrin-kg and earth_metabolome_ontologyDirectory structure looks like the following. This directory can be used in combination with the code at the github repo metrin-kg.└── metrin-kg-data    ├── ontology    │   └── emi.ttl.gz    ├── processed    │   ├── globi    │   │   ├── correctedBiologicalSexNames.tsv    │   │   ├── correctedBodyPartNamesGlobi.csv    │   │   ├── correctedLifeStageNamesGlobi.csv    │   │   ├── mappedBiologicalSexNames.tsv    │   │   ├── unmappedBiologicalSexNames.tsv    │   │   ├── verbatim_mappedBodyPartNamesGlobi.csv    │   │   ├── verbatim_mappedLifeStageNamesGlobi.csv    │   │   ├── verbatim_unmappedBodyPartNamesGlobi_mod.csv    │   │   └── verbatim_unmappedLifeStageNamesGlobi_mod.csv    │   ├── KG    │   │   ├── enpkg-rdf-v4.tar.gz    │   │   ├── globi_output.ttl.gz    │   │   ├── taxonomy_output.ttl.gz    │   │   └── trydb_output.ttl.gz    │   ├── trydb    │   │   ├── EmiMappingToTryDb.txt    │   │   ├── qudtMappingToTryDb_full.txt    │   │   └── qudtMappingToTryDb.txt    │   ├── wdTax_duplicates.txt    │   ├── wdTax_GloBI.txt.gz    │   ├── wdTax_SPARQL_lineage_filtered_aligned.txt.gz    │   ├── wdTax_SPARQL_lineage_filtered.txt.gz    │   ├── wdTax_SPARQL_lineage.txt.gz    │   ├── wdTax_SPARQL.txt.gz    │   └── wdTax_TRYdb.txt.gz    └── raw        ├── enpkg_wd_pfId.csv.gz        ├── Try20243712146549_TRY6.0_SpeciesList_TaxonomicHarmonization.csv        └── TRYdb_40340.txt.gz

Files associated with MEtabolomes, TRaits, and INteractions-Knowledge Graph (METRIN-KG). Contains input and output files used in mapping taxonomy, metadata, ontology and knowledge graph construction. Associated github repositories are metrin-kg and earth_metabolome_ontologyDirectory structure looks like the following. This directory can be used in combination with the code at the github repo metrin-kg.└── metrin-kg-data    ├── ontology    │   └── emi.ttl.gz    ├── processed    │   ├── globi    │   │   ├── correctedBiologicalSexNames.tsv    │   │   ├── correctedBodyPartNamesGlobi.csv    │   │   ├── correctedLifeStageNamesGlobi.csv    │   │   ├── mappedBiologicalSexNames.tsv    │   │   ├── unmappedBiologicalSexNames.tsv    │   │   ├── verbatim_mappedBodyPartNamesGlobi.csv    │   │   ├── verbatim_mappedLifeStageNamesGlobi.csv    │   │   ├── verbatim_unmappedBodyPartNamesGlobi_mod.csv    │   │   └── verbatim_unmappedLifeStageNamesGlobi_mod.csv    │   ├── KG    │   │   ├── enpkg-rdf-v4.tar.gz    │   │   ├── globi_output.ttl.gz    │   │   ├── taxonomy_output.ttl.gz    │   │   └── trydb_output.ttl.gz    │   ├── trydb    │   │   ├── EmiMappingToTryDb.txt    │   │   ├── qudtMappingToTryDb_full.txt    │   │   └── qudtMappingToTryDb.txt    │   ├── wdTax_duplicates.txt    │   ├── wdTax_GloBI.txt.gz    │   ├── wdTax_SPARQL_lineage_filtered_aligned.txt.gz    │   ├── wdTax_SPARQL_lineage_filtered.txt.gz    │   ├── wdTax_SPARQL_lineage.txt.gz    │   ├── wdTax_SPARQL.txt.gz    │   └── wdTax_TRYdb.txt.gz    └── raw        ├── enpkg_wd_pfId.csv.gz        ├── Try20243712146549_TRY6.0_SpeciesList_TaxonomicHarmonization.csv        └── TRYdb_40340.txt.gz

Files associated with MEtabolomes, TRaits, and INteractions-Knowledge Graph (METRIN-KG). Contains input and output files used in mapping taxonomy, metadata, ontology and knowledge graph construction. Associated github repositories are metrin-kg and earth_metabolome_ontologyDirectory structure looks like the following. This directory can be used in combination with the code at the github repo metrin-kg.└── metrin-kg-data    ├── ontology    │   └── emi.ttl.gz    ├── processed    │   ├── globi    │   │   ├── correctedBiologicalSexNames.tsv    │   │   ├── correctedBodyPartNamesGlobi.csv    │   │   ├── correctedLifeStageNamesGlobi.csv    │   │   ├── mappedBiologicalSexNames.tsv    │   │   ├── unmappedBiologicalSexNames.tsv    │   │   ├── verbatim_mappedBodyPartNamesGlobi.csv    │   │   ├── verbatim_mappedLifeStageNamesGlobi.csv    │   │   ├── verbatim_unmappedBodyPartNamesGlobi_mod.csv    │   │   └── verbatim_unmappedLifeStageNamesGlobi_mod.csv    │   ├── KG    │   │   ├── enpkg-rdf-v4.tar.gz    │   │   ├── globi_output.ttl.gz    │   │   ├── taxonomy_output.ttl.gz    │   │   └── trydb_output.ttl.gz    │   ├── trydb    │   │   ├── EmiMappingToTryDb.txt    │   │   ├── qudtMappingToTryDb_full.txt    │   │   └── qudtMappingToTryDb.txt    │   ├── wdTax_duplicates.txt    │   ├── wdTax_GloBI.txt.gz    │   ├── wdTax_SPARQL_lineage_filtered_aligned.txt.gz    │   ├── wdTax_SPARQL_lineage_filtered.txt.gz    │   ├── wdTax_SPARQL_lineage.txt.gz    │   ├── wdTax_SPARQL.txt.gz    │   └── wdTax_TRYdb.txt.gz    └── raw        ├── enpkg_wd_pfId.csv.gz        ├── Try20243712146549_TRY6.0_SpeciesList_TaxonomicHarmonization.csv        └── TRYdb_40340.txt.gz

Synthesised version of desk-based mapping data, collected in connection with investigation of discipline-specific requirements and needs with regard to preservation of digital objects, run by Task 3.1 of the EOSC EDEN project.The data were collected by members of EOSC EDEN WP3 and WP2 in the period March-May 2025. The data were synthesised by members of EOSC EDEN WP3 in May 2025. EOSC EDEN is funded by the European Union (Grant Agreement number: 10118801). Views and opinions expressed are however those of the author(s) only and do not necessarily reflect those of the European Union or the Agency. Neither the European Union nor the granting authority can be held responsible for them.

Synthesised version of desk-based mapping data, collected in connection with investigation of discipline-specific requirements and needs with regard to preservation of digital objects, run by Task 3.1 of the EOSC EDEN project.The data were collected by members of EOSC EDEN WP3 and WP2 in the period March-May 2025. The data were synthesised by members of EOSC EDEN WP3 in May 2025. EOSC EDEN is funded by the European Union (Grant Agreement number: 10118801). Views and opinions expressed are however those of the author(s) only and do not necessarily reflect those of the European Union or the Agency. Neither the European Union nor the granting authority can be held responsible for them.

Files associated with MEtabolomes, TRaits, and INteractions-Knowledge Graph (METRIN-KG). Contains input and output files used in mapping taxonomy, metadata, ontology and knowledge graph construction. Associated github repositories are metrin-kg and earth_metabolome_ontologyDirectory structure looks like the following. This directory can be used in combination with the code at the github repo metrin-kg.└── metrin-kg-data    ├── ontology    │   └── emi.ttl.gz    ├── processed    │   ├── globi    │   │   ├── correctedBiologicalSexNames.tsv    │   │   ├── correctedBodyPartNamesGlobi.csv    │   │   ├── correctedLifeStageNamesGlobi.csv    │   │   ├── mappedBiologicalSexNames.tsv    │   │   ├── unmappedBiologicalSexNames.tsv    │   │   ├── verbatim_mappedBodyPartNamesGlobi.csv    │   │   ├── verbatim_mappedLifeStageNamesGlobi.csv    │   │   ├── verbatim_unmappedBodyPartNamesGlobi_mod.csv    │   │   └── verbatim_unmappedLifeStageNamesGlobi_mod.csv    │   ├── KG    │   │   ├── dbgi-emi-rdf-v3.zip    │   │   ├── globi_output.ttl.gz    │   │   ├── taxonomy_output.ttl.gz    │   │   └── trydb_output.ttl.gz    │   ├── trydb    │   │   ├── EmiMappingToTryDb.txt    │   │   ├── qudtMappingToTryDb_full.txt    │   │   └── qudtMappingToTryDb.txt    │   ├── wdTax_duplicates.txt    │   ├── wdTax_GloBI.txt.gz    │   ├── wdTax_SPARQL_lineage_filtered_aligned.txt.gz    │   ├── wdTax_SPARQL_lineage_filtered.txt.gz    │   ├── wdTax_SPARQL_lineage.txt.gz    │   ├── wdTax_SPARQL.txt.gz    │   └── wdTax_TRYdb.txt.gz    └── raw        ├── enpkg_wd_pfId.csv.gz        ├── Try20243712146549_TRY6.0_SpeciesList_TaxonomicHarmonization.csv        └── TRYdb_40340.txt.gz